2VZN image
Deposition Date 2008-08-05
Release Date 2008-09-09
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2VZN
Keywords:
Title:
Crystal structure of the major allergen from fire ant venom, Sol i 3
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 61
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VENOM ALLERGEN 3
Chain IDs:A, B
Chain Length:218
Number of Molecules:2
Biological Source:SOLENOPSIS INVICTA
Ligand Molecules
Primary Citation
Crystal Structure of the Major Allergen from Fire Ant Venom, Sol I 3
J.Mol.Biol. 383 178 ? (2008)
PMID: 18761353 DOI: 10.1016/J.JMB.2008.08.023

Abstact

Fire ant venom is an extremely potent allergy-inducing agent containing four major allergens, Sol i 1 to Sol i 4, which are the most frequent cause of hypersensitivity reactions to hymenoptera in the southern USA. The crystal structure of recombinant (Baculovirus) major fire ant allergen Sol i 3 has been determined to a resolution of 3.1 A by the method of molecular replacement. The secondary-structure elements of Sol i 3 are arranged in an alpha-beta-alpha sandwich fold consisting of a central antiparallel beta-sheet surrounded on both sides by alpha helices. The overall structure is very similar to that of the homologous wasp venom allergen Ves v 5 with major differences occurring in the solvent-exposed loop regions that contain amino acid insertions. Consequently, the limited conservation of surface chemical properties and topology between Sol i 3 and Ves v 5 may explain the observed lack of relevant cross-reactivity. It is concluded that Sol i 3 recognizes immunoglobulin E antibodies with a distinct set of its own epitopes, which are different from those of Ves v 5. Indeed, the molecular area in Sol i 3 covered by non-conserved residues is large enough to accommodate four unique Sol i 3 epitopes.

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Disease

Primary Citation of related structures
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