ISDA

Deposition Date 2008-06-05

Release Date 2009-07-07

Last Version Date 2024-11-20

Entry Detail

PDB ID:

2VVC

Keywords:

HYDROLASE

Title:

Aminopyrrolidine Factor Xa inhibitor

Biological Source:

Source Organism:

HOMO SAPIENS (Taxon ID: 9606)

Host Organism:

ESCHERICHIA COLI

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.95 Å

R-Value Free:

0.27

R-Value Work:

0.19

R-Value Observed:

0.20

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ACTIVATED FACTOR XA HEAVY CHAIN
Gene (Uniprot):F10
Mutations:YES
Chain IDs:A, B
Chain Length:241
Number of Molecules:2
Biological Source:HOMO SAPIENS

UniProt ID:P00742 Pfam ID:PF00089, PF14670 EC:3.4.21.6

Protein Blast

Polymer Type:polypeptide(L)
Molecule:FACTOR X LIGHT CHAIN
Gene (Uniprot):F10
Chain IDs:C (auth: K), D (auth: L)
Chain Length:55
Number of Molecules:2
Biological Source:HOMO SAPIENS

UniProt ID:P00742 Pfam ID:PF00089, PF14670 EC:3.4.21.6

Ligand Molecules

LZF

Primary Citation

Design of Novel Aminopyrrolidine Factor Xa Inhibitors from a Screening Hit.

Zbinden, K.G, Anselm, L, Banner, D.W, Benz, J.M, Blasco, F, Decoret, G, Himber, J, Kuhn, B, Panday, N, Ricklin, F, Risch, P, Schlatter, D, Stahl, M, Thomi, S, Unger, R, Haap, W.Show

Eur.J.Med.Chem. 44 2787 ? (2009)

PMID: 19200624 DOI: 10.1016/J.EJMECH.2008.12.025

Abstact

Starting from a hit identified by focused screening, 3-aminopyrrolidine factor Xa inhibitors were designed. The binding mode as determined by X-ray structural analysis as well as the pharmacokinetic behaviour of selected compounds is discussed.

Legend

Protein

Chemical

Disease

Primary Citation of related structures