2VUP image
Deposition Date 2008-05-28
Release Date 2008-06-17
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2VUP
Keywords:
Title:
Crystal structure of a type II tryparedoxin-dependant peroxidase from Trypanosoma brucei
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GLUTATHIONE PEROXIDASE-LIKE PROTEIN
Gene (Uniprot):gpx2
Chain IDs:A
Chain Length:190
Number of Molecules:1
Biological Source:TRYPANOSOMA BRUCEI
Primary Citation
Structural and Mechanistic Insights Into Type II Trypanosomatid Tryparedoxin-Dependent Peroxidases.
Biochem.J. 414 375 ? (2008)
PMID: 18522537 DOI: 10.1042/BJ20080889

Abstact

TbTDPX (Trypanosoma brucei tryparedoxin-dependent peroxidase) is a genetically validated drug target in the fight against African sleeping sickness. Despite its similarity to members of the GPX (glutathione peroxidase) family, TbTDPX2 is functional as a monomer, lacks a selenocysteine residue and relies instead on peroxidatic and resolving cysteine residues for catalysis and uses tryparedoxin rather than glutathione as electron donor. Kinetic studies indicate a saturable Ping Pong mechanism, unlike selenium-dependent GPXs, which display infinite K(m) and V(max) values. The structure of the reduced enzyme at 2.1 A (0.21 nm) resolution reveals that the catalytic thiol groups are widely separated [19 A (0.19 nm)] and thus unable to form a disulphide bond without a large conformational change in the secondary-structure architecture, as reported for certain plant GPXs. A model of the oxidized enzyme structure is presented and the implications for small-molecule inhibition are discussed.

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Primary Citation of related structures
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