2VSS image
Entry Detail
PDB ID:
2VSS
Keywords:
Title:
Wild-type Hydroxycinnamoyl-CoA hydratase lyase in complex with acetyl- CoA and vanillin
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2008-04-29
Release Date:
2008-05-27
Method Details:
Experimental Method:
Resolution:
2.22 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:P-HYDROXYCINNAMOYL COA HYDRATASE/LYASE
Chain IDs:A, B, C, D
Chain Length:276
Number of Molecules:4
Biological Source:PSEUDOMONAS FLUORESCENS
Polymer Type:polypeptide(L)
Description:P-HYDROXYCINNAMOYL COA HYDRATASE/LYASE
Chain IDs:E
Chain Length:276
Number of Molecules:1
Biological Source:PSEUDOMONAS FLUORESCENS
Polymer Type:polypeptide(L)
Description:P-HYDROXYCINNAMOYL COA HYDRATASE/LYASE
Chain IDs:F
Chain Length:276
Number of Molecules:1
Biological Source:PSEUDOMONAS FLUORESCENS
Primary Citation
A Ternary Complex of Hydroxycinnamoyl-Coa Hydratase-Lyase (Hchl) with Acetyl-Coa and Vanillin Gives Insights Into Substrate Specificity and Mechanism.
Biochem.J. 414 281 ? (2008)
PMID: 18479250 DOI: 10.1042/BJ20080714

Abstact

HCHL (hydroxycinnamoyl-CoA hydratase-lyase) catalyses the biotransformation of feruloyl-CoA to acetyl-CoA and the important flavour-fragrance compound vanillin (4-hydroxy-3-methoxybenzaldehyde) and is exploited in whole-cell systems for the bioconversion of ferulic acid into natural equivalent vanillin. The reaction catalysed by HCHL has been thought to proceed by a two-step process involving first the hydration of the double bond of feruloyl-CoA and then the cleavage of the resultant beta-hydroxy thioester by retro-aldol reaction to yield the products. Kinetic analysis of active-site residues identified using the crystal structure of HCHL revealed that while Glu-143 was essential for activity, Ser-123 played no major role in catalysis. However, mutation of Tyr-239 to Phe greatly increased the K(M) for the substrate ferulic acid, fulfilling its anticipated role as a factor in substrate binding. Structures of WT (wild-type) HCHL and of the S123A mutant, each of which had been co-crystallized with feruloyl-CoA, reveal a subtle helix movement upon ligand binding, the consequence of which is to bring the phenolic hydroxyl of Tyr-239 into close proximity to Tyr-75 from a neighbouring subunit in order to bind the phenolic hydroxyl of the product vanillin, for which electron density was observed. The active-site residues of ligand-bound HCHL display a remarkable three-dimensional overlap with those of a structurally unrelated enzyme, vanillyl alcohol oxidase, that also recognizes p-hydroxylated aromatic substrates related to vanillin. The data both explain the observed substrate specificity of HCHL for p-hydroxylated cinnamate derivatives and illustrate a remarkable convergence of the molecular determinants of ligand recognition between the two otherwise unrelated enzymes.

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Primary Citation of related structures