2VSM image
Deposition Date 2008-04-25
Release Date 2008-05-20
Last Version Date 2024-10-23
Entry Detail
PDB ID:
2VSM
Keywords:
Title:
Nipah virus attachment glycoprotein in complex with human cell surface receptor ephrinB2
Biological Source:
Source Organism:
Nipah virus (Taxon ID: 121791)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HEMAGGLUTININ-NEURAMINIDASE
Gene (Uniprot):G
Chain IDs:A
Chain Length:416
Number of Molecules:1
Biological Source:Nipah virus
Polymer Type:polypeptide(L)
Molecule:EPHRIN-B2
Gene (Uniprot):EFNB2
Chain IDs:B
Chain Length:140
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Structural Basis of Nipah and Hendra Virus Attachment to Their Cell-Surface Receptor Ephrin-B2
Nat.Struct.Mol.Biol. 15 567 ? (2008)
PMID: 18488039 DOI: 10.1038/NSMB.1435

Abstact

Nipah and Hendra viruses are emergent paramyxoviruses, causing disease characterized by rapid onset and high mortality rates, resulting in their classification as Biosafety Level 4 pathogens. Their attachment glycoproteins are essential for the recognition of the cell-surface receptors ephrin-B2 (EFNB2) and ephrin-B3 (EFNB3). Here we report crystal structures of both Nipah and Hendra attachment glycoproteins in complex with human EFNB2. In contrast to previously solved paramyxovirus attachment complexes, which are mediated by sialic acid interactions, the Nipah and Hendra complexes are maintained by an extensive protein-protein interface, including a crucial phenylalanine side chain on EFNB2 that fits snugly into a hydrophobic pocket on the viral protein. By analogy with the development of antivirals against sialic acid binding viruses, these results provide a structural template to target antiviral inhibition of protein-protein interactions.

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Primary Citation of related structures