2VR3 image
Deposition Date 2008-03-25
Release Date 2009-05-19
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2VR3
Keywords:
Title:
Structural and Biochemical Characterization of Fibrinogen binding to ClfA from Staphylocccus aureus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CLUMPING FACTOR A
Gene (Uniprot):clfA
Mutations:YES
Chain IDs:A, B
Chain Length:329
Number of Molecules:2
Biological Source:STAPHYLOCOCCUS AUREUS
Polymer Type:polypeptide(L)
Molecule:FIBRINOGEN GAMMA-CHAIN
Gene (Uniprot):FGG
Mutations:YES
Chain IDs:C, D
Chain Length:13
Number of Molecules:2
Biological Source:HOMO SAPIENS
Primary Citation
A Structural Model of the Staphylococcus Aureus Clfa-Fibrinogen Interaction Opens New Avenues for the Design of Anti-Staphylococcal Therapeutics.
Plos Pathog. 4 226 ? (2008)
PMID: 19043557 DOI: 10.1371/JOURNAL.PPAT.1000226

Abstact

The fibrinogen (Fg) binding MSCRAMM Clumping factor A (ClfA) from Staphylococcus aureus interacts with the C-terminal region of the fibrinogen (Fg) gamma-chain. ClfA is the major virulence factor responsible for the observed clumping of S. aureus in blood plasma and has been implicated as a virulence factor in a mouse model of septic arthritis and in rabbit and rat models of infective endocarditis. We report here a high-resolution crystal structure of the ClfA ligand binding segment in complex with a synthetic peptide mimicking the binding site in Fg. The residues in Fg required for binding to ClfA are identified from this structure and from complementing biochemical studies. Furthermore, the platelet integrin alpha(IIb)beta(3) and ClfA bind to the same segment in the Fg gamma-chain but the two cellular binding proteins recognize different residues in the common targeted Fg segment. Based on these differences, we have identified peptides that selectively antagonize the ClfA-Fg interaction. The ClfA-Fg binding mechanism is a variant of the "Dock, Lock and Latch" mechanism previously described for the Staphylococcus epidermidis SdrG-Fg interaction. The structural insights gained from analyzing the ClfANFg peptide complex and identifications of peptides that selectively recognize ClfA but not alpha(IIb)beta(3) may allow the design of novel anti-staphylococcal agents. Our results also suggest that different MSCRAMMs with similar structural organization may have originated from a common ancestor but have evolved to accommodate specific ligand structures.

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Primary Citation of related structures