2VQ1 image
Entry Detail
PDB ID:
2VQ1
Keywords:
Title:
anti trimeric Lewis X Fab54-5C10-A
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2008-03-10
Release Date:
2009-01-27
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:IGKV1-117 PROTEIN
Chain IDs:A, C (auth: E)
Chain Length:217
Number of Molecules:2
Biological Source:MUS MUSCULUS
Polymer Type:polypeptide(L)
Description:ANTI-HUMAN FC GAMMA RECEPTOR III 3G8 GAMMA HEAVY CHAIN VARIABLE REGION
Chain IDs:B, D (auth: F)
Chain Length:218
Number of Molecules:2
Biological Source:MUS MUSCULUS
Primary Citation
Characterization of a Diagnostic Fab Fragment Binding Trimeric Lewis X.
Proteins 76 439 ? (2009)
PMID: 19173313 DOI: 10.1002/PROT.22356

Abstact

Lewis X trisaccharides normally function as essential cell-cell interaction mediators. However, oligomers of Lewis X trisaccharides expressed by the parasite Schistosoma mansoni seem to be related to its evasion of the immune response of its human host. Here we show that monoclonal antibody 54-5C10-A, which is used to diagnose schistosomiasis in humans, interacts with oligomers of at least three Lewis X trisaccharides, but not with monomeric Lewis X. We describe the sequence and the 2.5 A crystal structure of its Fab fragment and infer a possible mode of binding of the polymeric Lewis X from docking studies. Our studies indicate a radically different mode of binding compared to Fab 291-2G3-A, which is specific for monomeric Lewis X, thus providing a structural explanation of the diagnostic success of 54-5C10-A.

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