2VNE image
Entry Detail
PDB ID:
2VNE
Keywords:
Title:
The X-ray structure of Norcoclaurine synthase from Thalictrum flavum
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2008-02-04
Release Date:
2008-08-05
Method Details:
Experimental Method:
Resolution:
2.72 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:S-NORCOCLAURINE SYNTHASE
Mutations:YES
Chain IDs:A, B
Chain Length:201
Number of Molecules:2
Biological Source:THALICTRUM FLAVUM
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structural Basis of Enzymatic S-Norcoclaurine Biosynthesis.
J.Biol.Chem. 284 897 ? (2009)
PMID: 19004827 DOI: 10.1074/JBC.M803738200

Abstact

The enzyme norcoclaurine synthase (NCS) catalyzes the stereospecific Pictet-Spengler cyclization between dopamine and 4-hydroxyphenylacetaldehyde, the key step in the benzylisoquinoline alkaloid biosynthetic pathway. The crystallographic structure of norcoclaurine synthase from Thalictrum flavum in its complex with dopamine substrate and the nonreactive substrate analogue 4-hydroxybenzaldehyde has been solved at 2.1A resolution. NCS shares no common features with the functionally correlated "Pictet-Spenglerases" that catalyze the first step of the indole alkaloids pathways and conforms to the overall fold of the Bet v1-like protein. The active site of NCS is located within a 20-A-long catalytic tunnel and is shaped by the side chains of a tyrosine, a lysine, an aspartic, and a glutamic acid. The geometry of the amino acid side chains with respect to the substrates reveals the structural determinants that govern the mechanism of the stereoselective Pictet-Spengler cyclization, thus establishing an excellent foundation for the understanding of the finer details of the catalytic process. Site-directed mutations of the relevant residues confirm the assignment based on crystallographic findings.

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