2VKR image
Entry Detail
PDB ID:
2VKR
Title:
3Fe-4S, 4Fe-4S plus Zn Acidianus ambivalens ferredoxin
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2007-12-23
Release Date:
2008-03-04
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.27
R-Value Observed:
0.21
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ZINC-CONTAINING FERREDOXIN
Chain IDs:A, B, C, D, E, F, G
Chain Length:103
Number of Molecules:7
Biological Source:ACIDIANUS AMBIVALENS
Primary Citation

Abstact

Detailed structural models of di-cluster seven-iron ferredoxins constitute a valuable resource for folding and stability studies relating the metal cofactors' role in protein stability. The here reported, hemihedric twinned crystal structure at 2.0 A resolution from Acidianus ambivalens ferredoxin, shows an integral 103 residues, physiologically relevant native form composed by a N-terminal extension comprising a His/Asp Zn(2+) site and the ferredoxin (betaalphabeta)(2) core, which harbours intact clusters I and II, a [3Fe-4S](1+/0) and a [4Fe-4S](2+/1+) centres. This is in contrast with the previously available ferredoxin structure from Sulfolofus tokodai, which was obtained from an artificial oxidative conversion with two [3Fe-4S](1+/0) centres and poor definition around cluster II.

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Primary Citation of related structures