2VDV image
Deposition Date 2007-10-11
Release Date 2007-12-18
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2VDV
Keywords:
Title:
Structure of trm8, m7G methylation enzyme
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE
Gene (Uniprot):TRM8
Chain IDs:A (auth: E), B (auth: F)
Chain Length:246
Number of Molecules:2
Biological Source:SACCHAROMYCES CEREVISIAE
Ligand Molecules
Primary Citation
Structure of the Yeast tRNA M7G Methylation Complex.
Structure 16 52 ? (2008)
PMID: 18184583 DOI: 10.1016/J.STR.2007.10.025

Abstact

Loss of N7-methylguanosine (m7G) modification is involved in the recently discovered rapid tRNA degradation pathway. In yeast, this modification is catalyzed by the heterodimeric complex composed of a catalytic subunit Trm8 and a noncatalytic subunit Trm82. We have solved the crystal structure of Trm8 alone and in complex with Trm82. Trm8 undergoes subtle conformational changes upon Trm82 binding which explains the requirement of Trm82 for activity. Cocrystallization with the S-adenosyl-methionine methyl donor defines the putative catalytic site and a guanine binding pocket. Small-angle X-ray scattering in solution of the Trm8-Trm82 heterodimer in complex with tRNA(Phe) has enabled us to propose a low-resolution structure of the ternary complex which defines the tRNA binding mode of Trm8-Trm82 and the structural elements contributing to specificity.

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Primary Citation of related structures