2VDB image
Deposition Date 2007-10-04
Release Date 2008-02-26
Last Version Date 2024-10-23
Entry Detail
PDB ID:
2VDB
Keywords:
Title:
Structure of human serum albumin with S-naproxen and the GA module
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.52 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SERUM ALBUMIN
Gene (Uniprot):ALB
Chain IDs:A
Chain Length:579
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:PEPTOSTREPTOCOCCAL ALBUMIN-BINDING PROTEIN
Gene (Uniprot):pab
Chain IDs:B
Chain Length:55
Number of Molecules:1
Biological Source:PEPTOSTREPTOCOCCUS MAGNUS
Primary Citation
Structural Basis for the Binding of Naproxen to Human Serum Albumin in the Presence of Fatty Acids and the Ga Module.
Acta Crystallogr.,Sect.F 64 64 ? (2008)
PMID: 18259051 DOI: 10.1107/S174430910706770X

Abstact

The previously determined crystal structure of the bacterial albumin-binding GA module in complex with human serum albumin (HSA) suggested the possibility of utilizing the complex in the study of ligand binding to HSA. As a continuation of these studies, the crystal structure of the HSA-GA complex with the drug molecule naproxen and the fatty acid decanoate bound to HSA has been determined to a resolution of 2.5 A. In terms of drug binding, the structure suggests that the binding of decanoate to the albumin molecule may play a role in making the haemin site in subdomain IB of the albumin molecule available for the binding of naproxen. In addition, structure comparisons with solved structures of HSA and of the HSA-GA complex show that the GA module is capable of binding to different conformations of HSA. The HSA-GA complex therefore emerges as a possible platform for the crystallographic study of specific HSA-drug interactions and of the influence exerted by the presence of fatty acids.

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