ISDA

Entry Detail

PDB ID:

2VD7

Keywords:

OXIDOREDUCTASE

Title:

Crystal Structure of JMJD2A complexed with inhibitor Pyridine-2,4- dicarboxylic acid

Biological Source:

Source Organism:

HOMO SAPIENS

Host Organism:

Escherichia coli BL21(DE3)

PDB Version:

Deposition Date:

2007-10-01

Release Date:

2007-11-27

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.25 Å

R-Value Free:

0.21

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 21 21 2

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3A
Chain IDs:A, B
Chain Length:381
Number of Molecules:2
Biological Source:HOMO SAPIENS

UniProt ID:O75164 Pfam ID:PF02375, PF02373 EC:1.14.11.27

Ligand Molecules

PD2

Primary Citation

Inhibitor scaffolds for 2-oxoglutarate-dependent histone lysine demethylases.

Rose, N.R, Ng, S.S, Mecinovic, J, Lienard, B.M, Bello, S.H, Sun, Z, McDonough, M.A, Oppermann, U, Schofield, C.J.Show

J. Med. Chem. 51 7053 7056 (2008)

PMID: 18942826 DOI: 10.1021/jm800936s

Abstact

The dynamic methylation of histone lysyl residues plays an important role in biology by regulating transcription, maintaining genomic integrity, and by contributing to epigenetic effects. Here we describe a variety of inhibitor scaffolds that inhibit the human 2-oxoglutarate-dependent JMJD2 subfamily of histone demethylases. Combined with structural data, these chemical starting points will be useful to generate small-molecule probes to analyze the physiological roles of these enzymes in epigenetic signaling.

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Primary Citation of related structures