2VBM image
Deposition Date 2007-09-14
Release Date 2008-04-22
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2VBM
Keywords:
Title:
Tailspike protein of bacteriophage Sf6 complexed with tetrasaccharide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TAILSPIKE-PROTEIN
Chain IDs:A
Chain Length:514
Number of Molecules:1
Biological Source:ENTEROBACTERIA PHAGE SF6
Primary Citation
An Intersubunit Active Site between Supercoiled Parallel Beta Helices in the Trimeric Tailspike Endorhamnosidase of Shigella Flexneri Phage Sf6.
Structure 16 766 ? (2008)
PMID: 18462681 DOI: 10.1016/J.STR.2008.01.019

Abstact

Sf6 belongs to the Podoviridae family of temperate bacteriophages that infect gram-negative bacteria by insertion of their double-stranded DNA. They attach to their hosts specifically via their tailspike proteins. The 1.25 A crystal structure of Shigella phage Sf6 tailspike protein (Sf6 TSP) reveals a conserved architecture with a central, right-handed beta helix. In the trimer of Sf6 TSP, the parallel beta helices form a left-handed, coiled-beta coil with a pitch of 340 A. The C-terminal domain consists of a beta sandwich reminiscent of viral capsid proteins. Further crystallographic and biochemical analyses show a Shigella cell wall O-antigen fragment to bind to an endorhamnosidase active site located between two beta-helix subunits each anchoring one catalytic carboxylate. The functionally and structurally related bacteriophage, P22 TSP, lacks sequence identity with Sf6 TSP and has its active sites on single subunits. Sf6 TSP may serve as an example for the evolution of different host specificities on a similar general architecture.

Legend

Protein

Chemical

Disease

Primary Citation of related structures