2VAI image
Deposition Date 2007-08-31
Release Date 2007-09-11
Last Version Date 2024-05-15
Entry Detail
PDB ID:
2VAI
Keywords:
Title:
Solution structure of a B-DNA hairpin at high pressure
Biological Source:
Source Organism:
(Taxon ID: ) (Taxon ID: )
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
1
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*UP*TP *TP*GP*GP*AP*TP*CP*CP*T)-3'
Chain IDs:A
Chain Length:18
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Structural change in a B-DNA helix with hydrostatic pressure.
Nucleic Acids Res. 36 4032 4037 (2008)
PMID: 18515837 DOI: 10.1093/nar/gkn350

Abstact

Study of the effects of pressure on macromolecular structure improves our understanding of the forces governing structure, provides details on the relevance of cavities and packing in structure, increases our understanding of hydration and provides a basis to understand the biology of high-pressure organisms. A study of DNA, in particular, helps us to understand how pressure can affect gene activity. Here we present the first high-resolution experimental study of B-DNA structure at high pressure, using NMR data acquired at pressures up to 200 MPa (2 kbar). The structure of DNA compresses very little, but is distorted so as to widen the minor groove, and to compress hydrogen bonds, with AT pairs compressing more than GC pairs. The minor groove changes are suggested to lead to a compression of the hydration water in the minor groove.

Legend

Protein

Chemical

Disease

Primary Citation of related structures