2V9V image
Deposition Date 2007-08-27
Release Date 2007-09-11
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2V9V
Keywords:
Title:
Crystal Structure of Moorella thermoacetica SelB(377-511)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.14
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR
Gene (Uniprot):selB
Chain IDs:A
Chain Length:135
Number of Molecules:1
Biological Source:MOORELLA THERMOACETICA
Primary Citation
Conformational Switches in Winged-Helix Domains 1 and 2 of Bacterial Translation Elongation Factor Selb.
Acta Crystallogr.,Sect.D 63 1075 ? (2007)
PMID: 17881825 DOI: 10.1107/S0907444907042229

Abstact

The crystal structure of the first two winged-helix motifs of translation elongation factor SelB from Moorella thermoacetica has been determined at 1.1 A resolution. Compared with the previous structure of the two domains in conjunction with winged-helix modules 3 and 4, the first winged-helix domain underwent a substantial conformational change during which the alpha-helical and beta-sheet portions of the element opened up like a shell. This conformational rearrangement was elicited by a change in the orientation of Trp396, leading to the disclosure of a bona fide ligand-binding site in the direct vicinity of Trp396. Additionally, the C-terminal tail of the second domain followed a different path compared with the previous structure. It is conceivable that these conformational switches constitute part of the molecular mechanism that underlies the communication between the N-terminal part of SelB, which binds Sec-tRNA(Sec) and GTP, and the C-terminal part of the protein, which binds selenocysteine-insertion sequences.

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