2V5C image
Deposition Date 2008-10-02
Release Date 2009-01-27
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2V5C
Keywords:
Title:
Family 84 glycoside hydrolase from Clostridium perfringens, 2.1 Angstrom structure
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:O-GLCNACASE NAGJ
Gene (Uniprot):nagJ
Chain IDs:A, B
Chain Length:594
Number of Molecules:2
Biological Source:CLOSTRIDIUM PERFRINGENS
Primary Citation
Portrait of an Enzyme: A Complete Structural Analysis of a Multi-Modular Beta-N-Acetylglucosaminidase from Clostridium Perfringens
J.Biol.Chem. 284 9876 ? (2009)
PMID: 19193644 DOI: 10.1074/JBC.M808954200

Abstact

Common features of the extracellular carbohydrate-active virulence factors involved in host-pathogen interactions are their large sizes and modular complexities. This has made them recalcitrant to structural analysis, and therefore our understanding of the significance of modularity in these important proteins is lagging. Clostridium perfringens is a prevalent human pathogen that harbors a wide array of large, extracellular carbohydrate-active enzymes and is an excellent and relevant model system to approach this problem. Here we describe the complete structure of C. perfringens GH84C (NagJ), a 1001-amino acid multimodular homolog of the C. perfringens micro-toxin, which was determined using a combination of small angle x-ray scattering and x-ray crystallography. The resulting structure reveals unprecedented insight into how catalysis, carbohydrate-specific adherence, and the formation of molecular complexes with other enzymes via an ultra-tight protein-protein interaction are spatially coordinated in an enzyme involved in a host-pathogen interaction.

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