2V3H image
Deposition Date 2007-06-18
Release Date 2008-06-24
Last Version Date 2025-04-09
Entry Detail
PDB ID:
2V3H
Title:
Thrombin with 3-cycle no F
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
HIRUDO MEDICINALIS (Taxon ID: 6421)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.79 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:THROMBIN HEAVY CHAIN
Gene (Uniprot):F2
Chain IDs:A (auth: H)
Chain Length:257
Number of Molecules:1
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIRUDIN IIA
Chain IDs:B (auth: I)
Chain Length:11
Number of Molecules:1
Biological Source:HIRUDO MEDICINALIS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:THROMBIN LIGHT CHAIN
Gene (Uniprot):F2
Chain IDs:C (auth: L)
Chain Length:28
Number of Molecules:1
Biological Source:HOMO SAPIENS
Peptide-like Molecules
PRD_000481
Primary Citation
Fluorine in Pharmaceuticals: Looking Beyond Intuition.
Science 317 1881 ? (2007)
PMID: 17901324 DOI: 10.1126/SCIENCE.1131943

Abstact

Fluorine substituents have become a widespread and important drug component, their introduction facilitated by the development of safe and selective fluorinating agents. Organofluorine affects nearly all physical and adsorption, distribution, metabolism, and excretion properties of a lead compound. Its inductive effects are relatively well understood, enhancing bioavailability, for example, by reducing the basicity of neighboring amines. In contrast, exploration of the specific influence of carbon-fluorine single bonds on docking interactions, whether through direct contact with the protein or through stereoelectronic effects on molecular conformation of the drug, has only recently begun. Here, we review experimental progress in this vein and add complementary analysis based on comprehensive searches in the Cambridge Structural Database and the Protein Data Bank.

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Primary Citation of related structures
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