2V1U image
Deposition Date 2007-05-30
Release Date 2007-09-18
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2V1U
Keywords:
Title:
STRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CELL DIVISION CONTROL PROTEIN 6 HOMOLOG
Gene (Uniprot):orc1
Chain IDs:A
Chain Length:387
Number of Molecules:1
Biological Source:AEROPYRUM PERNIX
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*TP*CP*TP*CP*CP*AP*CP*AP*GP*GP *AP*AP*AP*CP*GP*GP*AP*GP*GP*GP*GP*T)-3'
Chain IDs:B
Chain Length:22
Number of Molecules:1
Biological Source:AEROPYRUM PERNIX
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*AP*CP*CP*CP*CP*TP*CP*CP*GP*TP *TP*TP*CP*CP*TP*GP*TP*GP*GP*AP*GP*A)-3'
Chain IDs:C
Chain Length:22
Number of Molecules:1
Biological Source:AEROPYRUM PERNIX
Primary Citation
Structural Basis of DNA Replication Origin Recognition by an Orc Protein.
Science 317 1213 ? (2007)
PMID: 17761880 DOI: 10.1126/SCIENCE.1143664

Abstact

DNA replication in archaea and in eukaryotes share many similarities. We report the structure of an archaeal origin recognition complex protein, ORC1, bound to an origin recognition box, a DNA sequence that is found in multiple copies at replication origins. DNA binding is mediated principally by a C-terminal winged helix domain that inserts deeply into the major and minor grooves, widening them both. However, additional DNA contacts are made with the N-terminal AAA+ domain, which inserts into the minor groove at a characteristic G-rich sequence, inducing a 35 degrees bend in the duplex and providing directionality to the binding site. Both contact regions also induce substantial unwinding of the DNA. The structure provides insight into the initial step in assembly of a replication origin and recruitment of minichromosome maintenance (MCM) helicase to that origin.

Legend

Protein

Chemical

Disease

Primary Citation of related structures