2UYZ image
Deposition Date 2007-04-21
Release Date 2007-06-12
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2UYZ
Keywords:
Title:
Non-covalent complex between Ubc9 and SUMO1
Biological Source:
Source Organism:
MUS MUSCULUS (Taxon ID: 10090)
HOMO SAPIENS (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SUMO-CONJUGATING ENZYME UBC9
Gene (Uniprot):Ube2i
Mutagens:YES
Chain IDs:A
Chain Length:158
Number of Molecules:1
Biological Source:MUS MUSCULUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SMALL UBIQUITIN-RELATED MODIFIER 1
Gene (Uniprot):SUMO1
Chain IDs:B
Chain Length:79
Number of Molecules:1
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation.
EMBO J. 26 2797 2807 (2007)
PMID: 17491593 DOI: 10.1038/sj.emboj.7601711

Abstact

The ubiquitin-related modifier SUMO regulates a wide range of cellular processes by post-translational modification with one, or a chain of SUMO molecules. Sumoylation is achieved by the sequential action of several enzymes in which the E2, Ubc9, transfers SUMO from the E1 to the target mostly with the help of an E3 enzyme. In this process, Ubc9 not only forms a thioester bond with SUMO, but also interacts with SUMO noncovalently. Here, we show that this noncovalent interaction promotes the formation of short SUMO chains on targets such as Sp100 and HDAC4. We present a crystal structure of the noncovalent Ubc9-SUMO1 complex, showing that SUMO is located far from the E2 active site and resembles the noncovalent interaction site for ubiquitin on UbcH5c and Mms2. Structural comparison suggests a model for poly-sumoylation involving a mechanism analogous to Mms2-Ubc13-mediated ubiquitin chain formation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures