2SIV image
Deposition Date 1998-06-17
Release Date 1998-08-19
Last Version Date 2024-10-23
Entry Detail
PDB ID:
2SIV
Title:
SIV GP41 CORE STRUCTURE
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SIV GP41 GLYCOPROTEIN
Chain IDs:A, C, E
Chain Length:38
Number of Molecules:3
Biological Source:Simian immunodeficiency virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SIV GP41 GLYCOPROTEIN
Chain IDs:B, D, F
Chain Length:36
Number of Molecules:3
Biological Source:Simian immunodeficiency virus
Primary Citation
Crystal structure of the simian immunodeficiency virus (SIV) gp41 core: conserved helical interactions underlie the broad inhibitory activity of gp41 peptides.
Proc.Natl.Acad.Sci.USA 95 9134 9139 (1998)
PMID: 9689046 DOI: 10.1073/pnas.95.16.9134

Abstact

The gp41 subunit of the envelope protein complex from human and simian immunodeficiency viruses (HIV and SIV) mediates membrane fusion during viral entry. The crystal structure of the HIV-1 gp41 ectodomain core in its proposed fusion-active state is a six-helix bundle. Here we have reconstituted the core of the SIV gp41 ectodomain with two synthetic peptides called SIV N36 and SIV C34, which form a highly helical trimer of heterodimers. The 2.2 A resolution crystal structure of this SIV N36/C34 complex is very similar to the analogous structure in HIV-1 gp41. In both structures, three N36 helices form a central trimeric coiled coil. Three C34 helices pack in an antiparallel orientation into highly conserved, hydrophobic grooves along the surface of this coiled coil. The conserved nature of the N36-C34 interface suggests that the HIV-1 and SIV peptides are functionally interchangeable. Indeed, a heterotypic complex between HIV-1 N36 and SIV C34 peptides is highly helical and stable. Moreover, as with HIV-1 C34, the SIV C34 peptide is a potent inhibitor of HIV-1 infection. These results identify conserved packing interactions between the N and C helices of gp41 and have implications for the development of C peptide analogs with broad inhibitory activity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback