2RU6 image
Deposition Date 2013-12-04
Release Date 2014-02-12
Last Version Date 2024-05-15
Entry Detail
PDB ID:
2RU6
Keywords:
Title:
The pure alternative state of ubiquitin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):UBC
Mutagens:Q41N
Chain IDs:A
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Close Identity between Alternatively Folded State N2 of Ubiquitin and the Conformation of the Protein Bound to the Ubiquitin-Activating Enzyme
Biochemistry 53 447 449 (2014)
PMID: 24401037 DOI: 10.1021/bi401617n

Abstact

We present the nuclear Overhauser effect-based structure determination of the Q41N variant of ubiquitin at 2500 bar, where the alternatively folded N2 state is 97% populated. This allows us to characterize the structure of the "pure" N2 state of ubiquitin. The N2 state shows a substantial change in the orientation of strand β5 compared to that of the normal folded N1 state, which matches the changes seen upon binding of ubiquitin to ubiquitin-activating enzyme E1. The recognition of E1 by ubiquitin is therefore best explained by conformational selection rather than induced-fit motion.

Legend

Protein

Chemical

Disease

Primary Citation of related structures