2RP3 image
Deposition Date 2008-04-30
Release Date 2008-08-19
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2RP3
Title:
Solution Structure of Cyanovirin-N Domain B Mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyanovirin-N
Mutations:E41A, N42A, P51G, T57A, R76A, Q78G
Chain IDs:A
Chain Length:101
Number of Molecules:1
Biological Source:Nostoc ellipsosporum
Ligand Molecules
Primary Citation
Solution and crystal structures of a sugar binding site mutant of cyanovirin-N: no evidence of domain swapping
Structure 16 1183 1194 (2008)
PMID: 18682220 DOI: 10.1016/j.str.2008.05.011

Abstact

The cyanobacterial lectin Cyanovirin-N (CV-N) exhibits antiviral activity against HIV at a low nanomolar concentration by interacting with high-mannose oligosaccharides on the virus surface envelope glycoprotein gp120. Atomic structures of wild-type CV-N revealed a monomer in solution and a domain-swapped dimer in the crystal, with the monomer comprising two independent carbohydrate binding sites that individually bind with micromolar affinity to di- and trimannoses. In the mutant CVN(mutDB), the binding site on domain B was abolished and the protein was found to be completely inactive against HIV. We determined the solution NMR and crystal structures of this variant and characterized its sugar binding properties. In solution and the crystal, CVN(mutDB) is a monomer and no domain-swapping was observed. The protein binds to Man-3 and Man-9 with similar dissociation constants (approximately 4 muM). This confirms that the nanomolar activity of wild-type CV-N is related to the multisite nature of the protein carbohydrate interaction.

Legend

Protein

Chemical

Disease

Primary Citation of related structures