ISDA: 2RKI

Deposition Date 2007-10-16

Release Date 2008-04-22

Last Version Date 2023-08-30

Entry Detail

PDB ID:

2RKI

Keywords:

TRANSFERASE

Title:

Crystal Structure of HIV-1 Reverse Transcriptase (RT) in Complex with a triazole derived NNRTI

Biological Source:

Source Organism:

Human immunodeficiency virus 1 (Taxon ID: 11676)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.30 Å

R-Value Free:

0.27

R-Value Work:

0.21

Space Group:

C 2 2 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HIV-1 reverse transcriptase (RT) p66
Gene (Uniprot):gag-pol
Chain IDs:A
Chain Length:560
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1

UniProt ID:P04585 Pfam ID:PF00078, PF06817, PF06815, PF00075

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HIV-1 reverse transcriptase (RT) p51
Gene (Uniprot):gag-pol
Chain IDs:B
Chain Length:440
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1

UniProt ID:P04585 Pfam ID:PF00078, PF06817, PF06815, PF00075

Ligand Molecules

GOL

SO4

TT1

Primary Citation

Triazole derivatives as non-nucleoside inhibitors of HIV-1 reverse transcriptase-structure-activity relationships and crystallographic analysis.

Kirschberg, T.A, Balakrishnan, M, Huang, W, Hluhanich, R, Kutty, N, Liclican, A.C, McColl, D.J, Squires, N.H, Lansdon, E.B.Show

Bioorg.Med.Chem.Lett. 18 1131 1134 (2008)

PMID: 18083512 DOI: 10.1016/j.bmcl.2007.11.127

Abstact

A series of 3,4,5-trisubstituted 1,2,4-4H triazole derivatives was synthesized and investigated for HIV-1 reverse transcriptase inhibition. An X-ray structure with HIV-1 RT secured the binding mode and allowed the key interactions with the enzyme to be identified.

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