2RGV image
Entry Detail
PDB ID:
2RGV
Title:
The crystal structure of PerR-Ox highlights 2-oxo-Histidine formation
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2007-10-05
Release Date:
2008-10-14
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.30
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Peroxide operon regulator
Chain IDs:A, B
Chain Length:145
Number of Molecules:2
Biological Source:Bacillus subtilis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OHI A HIS 3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANINE
Ligand Molecules
Primary Citation
Structural and functional characterization of 2-oxo-histidine in oxidized PerR protein.
Nat.Chem.Biol. 5 53 59 (2009)
PMID: 19079268 DOI: 10.1038/nchembio.133

Abstact

In Bacillus subtilis, PerR is a metal-dependent sensor of hydrogen peroxide. PerR is a dimeric zinc protein with a regulatory site that coordinates either Fe(2+) (PerR-Zn-Fe) or Mn(2+) (PerR-Zn-Mn). Though most of the peroxide sensors use cysteines to detect H(2)O(2), it has been shown that reaction of PerR-Zn-Fe with H(2)O(2) leads to the oxidation of one histidine residue. Oxidation of PerR leads to the incorporation of one oxygen atom into His37 or His91. This study presents the crystal structure of the oxidized PerR protein (PerR-Zn-ox), which clearly shows a 2-oxo-histidine residue in position 37. Formation of 2-oxo-histidine is demonstrated and quantified by HPLC-MS/MS. EPR experiments indicate that PerR-Zn-H37ox retains a significant affinity for the regulatory metal, whereas PerR-Zn-H91ox shows a considerably reduced affinity for the metal ion. In spite of these major differences in terms of metal binding affinity, oxidation of His37 and/or His91 in PerR prevents DNA binding.

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Primary Citation of related structures