2RDK image
Deposition Date 2007-09-24
Release Date 2008-05-06
Last Version Date 2024-11-06
Entry Detail
PDB ID:
2RDK
Title:
Five site mutated Cyanovirin-N with Mannose dimer bound
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.35 Å
R-Value Free:
0.19
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cyanovirin-N
Mutagens:K3N T7A E23I N93A P51G
Chain IDs:A, B
Chain Length:109
Number of Molecules:2
Biological Source:Nostoc ellipsosporum
Peptide-like Molecules
PRD_900111
Primary Citation
Conformational gating of dimannose binding to the antiviral protein cyanovirin revealed from the crystal structure at 1.35 A resolution.
Protein Sci. 17 939 944 (2008)
PMID: 18436959 DOI: 10.1110/ps.083472808

Abstact

Cyanovirin (CV-N) is a small lectin with potent HIV neutralization activity, which could be exploited for a mucosal defense against HIV infection. The wild-type (wt) protein binds with high affinity to mannose-rich oligosaccharides on the surface of gp120 through two quasi-symmetric sites, located in domains A and B. We recently reported on a mutant of CV-N that contained a single functional mannose-binding site, domain B, showing that multivalent binding to oligomannosides is necessary for antiviral activity. The structure of the complex with dimannose determined at 1.8 A resolution revealed a different conformation of the binding site than previously observed in the NMR structure of wt CV-N. Here, we present the 1.35 A resolution structure of the complex, which traps three different binding conformations of the site and provides experimental support for a locking and gating mechanism in the nanoscale time regime observed by molecular dynamics simulations.

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Primary Citation of related structures