2RDD image
Deposition Date 2007-09-22
Release Date 2007-12-11
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2RDD
Title:
X-ray crystal structure of AcrB in complex with a novel transmembrane helix.
Biological Source:
Source Organism(s):
Escherichia coli (Taxon ID: 562)
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.31
R-Value Work:
0.27
Space Group:
H 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acriflavine resistance protein B
Gene (Uniprot):acrB
Chain IDs:A
Chain Length:1049
Number of Molecules:1
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UPF0092 membrane protein yajC
Gene (Uniprot):yajC
Chain IDs:B
Chain Length:37
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist.
Structure 15 1663 1673 (2007)
PMID: 18073115 DOI: 10.1016/j.str.2007.09.023

Abstact

Bacterial drug resistance is a serious concern for human health. Multidrug efflux pumps export a broad variety of substrates out of the cell and thereby convey resistance to the host. In Escherichia coli, the AcrB:AcrA:TolC efflux complex forms a principal transporter for which structures of the individual component proteins have been determined in isolation. Here, we present the X-ray structure of AcrB in complex with a single transmembrane protein, assigned by mass spectrometry as YajC. A specific rotation of the periplasmic porter domain of AcrB is also revealed, consistent with the hypothesized "twist-to-open" mechanism for TolC activation. Growth experiments with yajc-deleted E. coli reveal a modest increase in the organism's susceptibility to beta-lactam antibiotics, but this effect could not conclusively be attributed to the loss of interactions between YajC and AcrB.

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Primary Citation of related structures
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