2QVW image
Deposition Date 2007-08-09
Release Date 2007-09-25
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2QVW
Keywords:
Title:
Structure of Giardia Dicer refined against twinned data
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GLP_546_48378_50642
Chain IDs:A, B, C, D
Chain Length:756
Number of Molecules:4
Biological Source:Giardia intestinalis
Ligand Molecules
Primary Citation
An unusual case of pseudo-merohedral twinning in orthorhombic crystals of Dicer
Acta Crystallogr.,Sect.D 63 993 999 (2007)
PMID: 17704568 DOI: 10.1107/S0907444907036128

Abstact

The crystal structure of the enzyme Dicer from Giardia intestinalis was solved to 3.3 A resolution by MAD using crystals belonging to space group P2(1)2(1)2 [Macrae et al. (2006), Science, 311, 195-198]. These crystals were derived from crystals that diffracted X-rays to 3.0 A resolution but were refractory to structure determination because they were twinned. It is shown here that the original Dicer crystals represent an unusual case of perfect pseudo-merohedral twinning of orthorhombic crystals. Before the twinning problem was overcome, it was possible to calculate a low-resolution electron-density map in space group P4(1) that was used to build a partial molecular model. Experimental phases were sufficient to identify heavy-atom sites that indicated space-group inconsistency, leading to identification of the true space group. This information guided the search for different crystallization conditions that yielded untwinned crystals and ultimately a fully interpretable electron-density map.

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Primary Citation of related structures