2QQC image
Entry Detail
PDB ID:
2QQC
Keywords:
Title:
E109Q mutant of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannashii
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2007-07-26
Release Date:
2008-03-18
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pyruvoyl-dependent arginine decarboxylase subunit beta
Chain IDs:A, C, E, G, I, K
Chain Length:53
Number of Molecules:6
Biological Source:Methanocaldococcus jannaschii
Polymer Type:polypeptide(L)
Description:Pyruvoyl-dependent arginine decarboxylase subunit alpha
Mutations:E109Q
Chain IDs:B, D, F, H, J, L
Chain Length:113
Number of Molecules:6
Biological Source:Methanocaldococcus jannaschii
Primary Citation
Structures of the N47A and E109Q mutant proteins of pyruvoyl-dependent arginine decarboxylase from Methanococcus jannaschii.
Acta Crystallogr.,Sect.D 64 377 382 (2008)
PMID: 18391404 DOI: 10.1107/S0907444908000474

Abstact

Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) catalyzes the first step of the polyamine-biosynthetic pathway in plants and some archaebacteria. The pyruvoyl group of PvlArgDC is generated by an internal autoserinolysis reaction at an absolutely conserved serine residue in the proenzyme, resulting in two polypeptide chains. Based on the native structure of PvlArgDC from Methanococcus jannaschii, the conserved residues Asn47 and Glu109 were proposed to be involved in the decarboxylation and autoprocessing reactions. N47A and E109Q mutant proteins were prepared and the three-dimensional structure of each protein was determined at 2.0 A resolution. The N47A and E109Q mutant proteins showed reduced decarboxylation activity compared with the wild-type PvlArgDC. These residues may also be important for the autoprocessing reaction, which utilizes a mechanism similar to that of the decarboxylation reaction.

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Primary Citation of related structures