2QQ0 image
Deposition Date 2007-07-25
Release Date 2007-10-16
Last Version Date 2024-02-21
Entry Detail
PDB ID:
2QQ0
Keywords:
Title:
Thymidine Kinase from Thermotoga Maritima in complex with thymidine + AppNHp
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thymidine kinase
Gene (Uniprot):tdk
Chain IDs:A, B
Chain Length:184
Number of Molecules:2
Biological Source:Thermotoga maritima
Primary Citation
Quaternary structure change as a mechanism for the regulation of thymidine kinase 1-like enzymes.
Structure 15 1555 1566 (2007)
PMID: 18073106 DOI: 10.1016/j.str.2007.09.025

Abstact

The human cytosolic thymidine kinase (TK) and structurally related TKs in prokaryotes play a crucial role in the synthesis and regulation of the cellular thymidine triphosphate pool. We report the crystal structures of the TK homotetramer from Thermotoga maritima in four different states: its apo-form, a binary complex with thymidine, as well as the ternary structures with the two substrates (thymidine/AppNHp) and the reaction products (TMP/ADP). In combination with fluorescence spectroscopy and mutagenesis experiments, our results demonstrate that ATP binding is linked to a substantial reorganization of the enzyme quaternary structure, leading to a transition from a closed, inactive conformation to an open, catalytic state. We hypothesize that these structural changes are relevant to enzyme function in situ as part of the catalytic cycle and serve an important role in regulating enzyme activity by amplifying the effects of feedback inhibitor binding.

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Primary Citation of related structures
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