ISDA

Deposition Date 2007-07-05

Release Date 2008-02-12

Last Version Date 2023-08-30

Entry Detail

PDB ID:

2QIQ

Keywords:

VIRAL PROTEIN

Title:

Structure-based Design and Synthesis and Biological Evaluation of Peptidomimetic SARS-3CLpro Inhibitors

Biological Source:

Source Organism:

SARS coronavirus (Taxon ID: 227859)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.90 Å

R-Value Free:

0.27

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

C 1 2 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Replicase polyprotein 1ab
Chain IDs:A
Chain Length:301
Number of Molecules:1
Biological Source:SARS coronavirus

UniProt ID:P0C6X7 Pfam ID:PF05409

Ligand Molecules

CYV

Primary Citation

Structure-based design, synthesis, and biological evaluation of peptidomimetic SARS-CoV 3CLpro inhibitors.

Ghosh, A.K, Xi, K, Grum-Tokars, V, Xu, X, Ratia, K, Fu, W, Houser, K.V, Baker, S.C, Johnson, M.E, Mesecar, A.D.Show

Bioorg.Med.Chem.Lett. 17 5876 5880 (2007)

PMID: 17855091 DOI: 10.1016/j.bmcl.2007.08.031

Abstact

Structure-based design, synthesis, and biological evaluation of a series of peptidomimetic severe acute respiratory syndrome-coronavirus chymotrypsin-like protease inhibitors are described. These inhibitors were designed and synthesized based upon our X-ray crystal structure of inhibitor 1 bound to SARS-CoV 3CLpro. Incorporation of Boc-Ser as the P(4)-ligand resulted in enhanced SARS-CoV 3CLpro inhibitory activity. Structural analysis of the inhibitor-bound X-ray structure revealed high binding affinity toward the enzyme.

Legend

Protein

Chemical

Disease

Primary Citation of related structures