2Q5H image
Deposition Date 2007-06-01
Release Date 2007-06-19
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2Q5H
Keywords:
Title:
Crystal structure of apo-wildtype Glycyl-tRNA synthetase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycyl-tRNA synthetase
Gene (Uniprot):GARS1
Chain IDs:A
Chain Length:691
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Crystal structure of human wildtype and S581L-mutant glycyl-tRNA synthetase, an enzyme underlying distal spinal muscular atrophy.
Febs Lett. 581 2959 2964 (2007)
PMID: 17544401 DOI: 10.1016/j.febslet.2007.05.046

Abstact

Dominant mutations in the ubiquitous enzyme glycyl-tRNA synthetase (GlyRS), including S581L, lead to motor nerve degeneration. We have determined crystal structures of wildtype and S581L-mutant human GlyRS. The S581L mutation is approximately 50A from the active site, and yet gives reduced aminoacylation activity. The overall structures of wildtype and S581L-GlyRS, including the active site, are very similar. However, residues 567-575 of the anticodon-binding domain shift position and in turn could indirectly affect glycine binding via the tRNA or alternatively inhibit conformational changes. Reduced enzyme activity may underlie neuronal degeneration, although a dominant-negative effect is more likely in this autosomal dominant disorder.

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Primary Citation of related structures
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