2Q5G image
Deposition Date 2007-06-01
Release Date 2008-06-03
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2Q5G
Keywords:
TRANSCRIPTION
Title:
Ligand binding domain of PPAR delta receptor in complex with a partial agonist
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: )
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.70 Å
R-Value Free:
0.30
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
2Q5G validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peroxisome proliferator-activated receptor delta
Gene (Uniprot):PPARD
Chain IDs:A, B
Chain Length:283
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q03181 Pfam ID:PF00104
Ligand Molecules
1FA
Primary Citation
Design of a partial PPARdelta agonist.
Bioorg.Med.Chem.Lett. 17 4625 4629 (2007)
PMID: 17560785 DOI: 10.1016/j.bmcl.2007.05.079

Abstact

Structure based ligand design was used in order to design a partial agonist for the PPARdelta receptor. The maximum activation in the transactivation assay was reduced from 87% to 39%. The crystal structure of the ligand binding domain of the PPARdelta receptor in complex with compound 2 was determined in order to understand the structural changes which gave rise to the decrease in maximum activation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
2GWX