2Q3N image
Entry Detail
PDB ID:
2Q3N
Keywords:
Title:
Agglutinin from Abrus Precatorius (APA-I)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2007-05-30
Release Date:
2007-06-26
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Agglutinin-1 A chain
Chain IDs:A
Chain Length:260
Number of Molecules:1
Biological Source:Abrus precatorius
Polymer Type:polypeptide(L)
Description:Agglutinin-1 B chain
Chain IDs:B
Chain Length:267
Number of Molecules:1
Biological Source:Abrus precatorius
Ligand Molecules
Primary Citation
Structure-Function Analysis and Insights into the Reduced Toxicity of Abrus precatorius Agglutinin I in Relation to Abrin.
J.Biol.Chem. 281 34465 34474 (2006)
PMID: 16772301 DOI: 10.1074/jbc.M601777200

Abstact

Abrin and agglutinin-I from the seeds of Abrus precatorius are type II ribosome-inactivating proteins that inhibit protein synthesis in eukaryotic cells. The two toxins share a high degree of sequence similarity; however, agglutinin-I is weaker in its activity. We compared the kinetics of protein synthesis inhibition by abrin and agglutinin-I in two different cell lines and found that approximately 200-2000-fold higher concentration of agglutinin-I is needed for the same degree of inhibition. Like abrin, agglutinin-I also induced apoptosis in the cells by triggering the intrinsic mitochondrial pathway, although at higher concentrations as compared with abrin. The reason for the decreased toxicity of agglutinin-I became apparent on the analysis of the crystal structure of agglutinin-I obtained by us in comparison with that of the reported structure of abrin. The overall protein folding of agglutinin-I is similar to that of abrin-a with a single disulfide bond holding the toxic A subunit and the lectin-like B-subunit together, constituting a heterodimer. However, there are significant differences in the secondary structural elements, mostly in the A chain. The substitution of Asn-200 in abrin-a with Pro-199 in agglutinin-I seems to be a major cause for the decreased toxicity of agglutinin-I. This perhaps is not a consequence of any kink formation by a proline residue in the helical segment, as reported by others earlier, but due to fewer interactions that proline can possibly have with the bound substrate.

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