ISDA

Deposition Date 2007-05-17

Release Date 2007-06-19

Last Version Date 2024-10-30

Entry Detail

PDB ID:

2PZ9

Keywords:

TRANSCRIPTION

Title:

Crystal structure of putative transcriptional regulator SCO4942 from Streptomyces coelicolor

Biological Source:

Source Organism:

Streptomyces coelicolor A3(2) (Taxon ID: 100226)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.80 Å

R-Value Free:

0.26

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

P 32 2 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Putative regulatory protein
Gene (Uniprot):2SCK31.02c
Chain IDs:A
Chain Length:226
Number of Molecules:1
Biological Source:Streptomyces coelicolor A3(2)

UniProt ID:Q9EWE9 Pfam ID:PF00440, PF17926

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
MSE	A	MET	SELENOMETHIONINE

Ligand Molecules

SO4

Primary Citation

In situ proteolysis for protein crystallization and structure determination.

Dong, A, Xu, X, Edwards, A.M, Chang, C, Chruszcz, M, Cuff, M, Cymborowski, M, Di Leo, R, Egorova, O, Evdokimova, E, Filippova, E, Gu, J, Guthrie, J, Ignatchenko, A, Joachimiak, A, Klostermann, N, Kim, Y, Korniyenko, Y, Minor, W, Que, Q, Savchenko, A, Skarina, T, Tan, K, Yakunin, A, Yee, A, Yim, V, Zhang, R, Zheng, H, Akutsu, M, Arrowsmith, C, Avvakumov, G.V, Bochkarev, A, Dahlgren, L.G, Dhe-Paganon, S, Dimov, S, Dombrovski, L, Finerty, P, Flodin, S, Flores, A, Graslund, S, Hammerstrom, M, Herman, M.D, Hong, B.S, Hui, R, Johansson, I, Liu, Y, Nilsson, M, Nedyalkova, L, Nordlund, P, Nyman, T, Min, J, Ouyang, H, Park, H.W, Qi, C, Rabeh, W, Shen, L, Shen, Y, Sukumard, D, Tempel, W, Tong, Y, Tresagues, L, Vedadi, M, Walker, J.R, Weigelt, J, Welin, M, Wu, H, Xiao, T, Zeng, H, Zhu, H.Show

Nat.Methods 4 1019 1021 (2007)

PMID: 17982461 DOI: 10.1038/nmeth1118

Abstact

We tested the general applicability of in situ proteolysis to form protein crystals suitable for structure determination by adding a protease (chymotrypsin or trypsin) digestion step to crystallization trials of 55 bacterial and 14 human proteins that had proven recalcitrant to our best efforts at crystallization or structure determination. This is a work in progress; so far we determined structures of 9 bacterial proteins and the human aminoimidazole ribonucleotide synthetase (AIRS) domain.

Legend

Protein

Chemical

Disease

Primary Citation of related structures