2PXI image
Deposition Date 2007-05-14
Release Date 2008-01-08
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2PXI
Keywords:
LYASE, TRANSFERASE/DNA
Title:
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monofluoromethylene triphosphate
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.10 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
2PXI validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA polymerase beta
Gene (Uniprot):POLB
Chain IDs:D (auth: A)
Chain Length:335
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P06746 Pfam ID:PF14716, PF10391, PF14792, PF14791 EC:2.7.7.7
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
DOC B DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
Ligand Molecules
CL
GFH
MG
NA
Primary Citation
(R)-beta,gamma-fluoromethylene-dGTP-DNA ternary complex with DNA polymerase beta.
J.Am.Chem.Soc. 129 15412 15413 (2007)
PMID: 18031037 DOI: 10.1021/ja072127v
Primary Citation of related structures
2ISO
2ISP