2PV6 image
Entry Detail
PDB ID:
2PV6
Keywords:
Title:
HIV-1 gp41 Membrane Proximal Ectodomain Region peptide in DPC micelle
Biological Source:
PDB Version:
Deposition Date:
2007-05-09
Release Date:
2008-03-18
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
17
Selection Criteria:
structures with the least restraint violations,structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein
Chain IDs:A
Chain Length:22
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Ligand Molecules
Primary Citation
HIV-1 broadly neutralizing antibody extracts its epitope from a kinked gp41 ectodomain region on the viral membrane
Immunity 28 52 63 (2008)
PMID: 18191596 DOI: 10.1016/j.immuni.2007.11.018

Abstact

Although rarely elicited during natural human infection, the most broadly neutralizing antibodies (BNAbs) against diverse human immunodeficiency virus (HIV)-1 strains target the membrane-proximal ectodomain region (MPER) of viral gp41. To gain insight into MPER antigenicity, immunogenicity, and viral function, we studied its structure in the lipid environment by a combination of nuclear magnetic resonance (NMR), electron paramagnetic resonance (EPR), and surface plasmon resonance (SPR) techniques. The analyses revealed a tilted N-terminal alpha helix (aa 664-672) connected via a short hinge to a flat C-terminal helical segment (675-683). This metastable L-shaped structure is immersed in viral membrane and, therefore, less accessible to immune attack. Nonetheless, the 4E10 BNAb extracts buried W672 and F673 after initial encounter with the surface-embedded MPER. The data suggest how BNAbs may perturb tryptophan residue-associated viral fusion involving the mobile N-terminal MPER segment and, given conservation of MPER sequences in HIV-1, HIV-2, and SIV, have important implications for structure-guided vaccine design.

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Primary Citation of related structures