2PM7 image
Deposition Date 2007-04-20
Release Date 2007-07-03
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2PM7
Title:
Crystal structure of yeast Sec13/31 edge element of the COPII vesicular coat, selenomethionine version
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein transport protein SEC31
Gene (Uniprot):SEC31
Chain IDs:A, C
Chain Length:399
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Protein transport protein SEC13
Gene (Uniprot):SEC13
Chain IDs:B, D
Chain Length:297
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structure and Organization of Coat Proteins in the COPII Cage.
Cell(Cambridge,Mass.) 129 1325 1336 (2007)
PMID: 17604721 DOI: 10.1016/j.cell.2007.05.036

Abstact

COPII-coated vesicles export newly synthesized proteins from the endoplasmic reticulum. The COPII coat consists of the Sec23/24-Sar1 complex that selects cargo and the Sec13/31 assembly unit that can polymerize into an octahedral cage and deform the membrane into a bud. Crystallographic analysis of the assembly unit reveals a 28 nm long rod comprising a central alpha-solenoid dimer capped by two beta-propeller domains at each end. We construct a molecular model of the COPII cage by fitting Sec13/31 crystal structures into a recently determined electron microscopy density map. The vertex geometry involves four copies of the Sec31 beta-propeller that converge through their axial ends; there is no interdigitation of assembly units of the kind seen in clathrin cages. We also propose that the assembly unit has a central hinge-an arrangement of interlocked alpha-solenoids-about which it can bend to adapt to cages of variable curvature.

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