2PKC image
Deposition Date 1993-06-04
Release Date 1994-01-31
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2PKC
Title:
CRYSTAL STRUCTURE OF CALCIUM-FREE PROTEINASE K AT 1.5 ANGSTROMS RESOLUTION
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEINASE K
Gene (Uniprot):PROK
Chain IDs:A
Chain Length:279
Number of Molecules:1
Biological Source:Engyodontium album
Ligand Molecules
Primary Citation
Crystal structure of calcium-free proteinase K at 1.5-A resolution.
J.Biol.Chem. 269 23108 23111 (1994)
PMID: 8083213

Abstact

Proteinase K from the fungus Tritirachium album Limber binds two Ca2+ ions, one strongly (Ca 1) and the other weakly (Ca 2). Removal of these cations reduces the stability of proteinase K as shown by thermal denaturation, but the proteolytic activity is unchanged. The x-ray structures of native and Ca(2+)-free proteinase K at 1.5-A resolution show that there are no cuts in the polypeptide backbone (i.e. no autolysis), Ca 1 has been replaced by Na+, while Ca 2 has been substituted by a water associated with a larger but locally confined structural change at that site. A small but concerted geometrical shift is transmitted from the Ca 1 site via eight secondary structure elements to the substrate recognition site (Gly100-Tyr104, and Ser132-Gly136) but not to the catalytic triad (Asp39,His69,Ser224). This is accompanied by positional changes of localized waters.

Legend

Protein

Chemical

Disease

Primary Citation of related structures