2P9N image
Deposition Date 2007-03-26
Release Date 2007-05-29
Last Version Date 2024-02-21
Entry Detail
PDB ID:
2P9N
Title:
Crystal Structure of bovine Arp2/3 complex co-crystallized with ADP
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin-like protein 3
Gene (Uniprot):ACTR3
Chain IDs:A
Chain Length:418
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-like protein 2
Gene (Uniprot):ACTR2
Chain IDs:B
Chain Length:394
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 1B
Gene (Uniprot):ARPC1B
Chain IDs:C
Chain Length:372
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 2
Gene (Uniprot):ARPC2
Chain IDs:D
Chain Length:300
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 3
Gene (Uniprot):ARPC3
Chain IDs:E
Chain Length:178
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 4
Gene (Uniprot):ARPC4
Chain IDs:F
Chain Length:168
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 5
Gene (Uniprot):ARPC5
Chain IDs:G
Chain Length:151
Number of Molecules:1
Biological Source:Bos taurus
Primary Citation
Insights into the Influence of Nucleotides on Actin Family Proteins from Seven Structures of Arp2/3 Complex.
Mol.Cell 26 449 457 (2007)
PMID: 17499050 DOI: 10.1016/j.molcel.2007.04.017

Abstact

ATP is required for nucleation of actin filament branches by Arp2/3 complex, but the influence of ATP binding and hydrolysis are poorly understood. We determined crystal structures of bovine Arp2/3 complex cocrystallized with various bound adenine nucleotides and cations. Nucleotide binding favors closure of the nucleotide-binding cleft of Arp3, but no large-scale conformational changes in the complex. Thus, ATP binding does not directly activate Arp2/3 complex but is part of a network of interactions that contribute to nucleation. We compared nucleotide-induced conformational changes of residues lining the cleft in Arp3 and actin structures to construct a movie depicting the proposed ATPase cycle for the actin family. Chemical crosslinking stabilized subdomain 1 of Arp2, revealing new electron density for 69 residues in this subdomain. Steric clashes with Arp3 appear to be responsible for intrinsic disorder of subdomains 1 and 2 of Arp2 in inactive Arp2/3 complex.

Legend

Protein

Chemical

Disease

Primary Citation of related structures