2P8Q image
Deposition Date 2007-03-22
Release Date 2008-01-22
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2P8Q
Title:
Crystal Structure of human Importin beta bound to the Snurportin1 IBB-domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Importin beta-1 subunit
Gene (Uniprot):KPNB1
Chain IDs:A
Chain Length:876
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Snurportin-1
Gene (Uniprot):SNUPN
Chain IDs:B
Chain Length:40
Number of Molecules:1
Biological Source:
Primary Citation
Molecular Basis for the Recognition of Snurportin 1 by Importin {beta}.
J.Biol.Chem. 283 7877 7884 (2008)
PMID: 18187419 DOI: 10.1074/jbc.M709093200

Abstact

The nuclear import of uridine-rich ribonucleoproteins is mediated by the transport adaptor snurportin 1 (SNP1). Similar to importin alpha, SNP1 uses an N-terminal importin beta binding (sIBB) domain to recruit the receptor importin beta and gain access to the nucleus. In this study, we demonstrate that the sIBB domain has a bipartite nature, which contains two distinct binding determinants for importin beta. The first determinant spans residues 25-65 and includes the previously identified importin alpha IBB (alphaIBB) region of homology. The second binding determinant encompasses residues 1-24 and resembles region 1011-1035 of the nucleoporin 153 (Nup153). The two binding determinants synergize within the sIBB domain to confer a low nanomolar binding affinity for importin beta (K(d) approximately 2 nm) in an interaction that, in vitro, is displaced by RanGTP. We propose that in vivo the synergy of Nup153 and nuclear RanGTP promotes translocation of uridine-rich ribonucleoproteins into the nucleus.

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Primary Citation of related structures