2P1H image
Deposition Date 2007-03-05
Release Date 2007-05-15
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2P1H
Keywords:
Title:
Rapid Folding and Unfolding of Apaf-1 CARD
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.59 Å
R-Value Free:
0.29
R-Value Work:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Apoptotic protease-activating factor 1
Gene (Uniprot):APAF1
Chain IDs:A
Chain Length:94
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Rapid Folding and Unfolding of Apaf-1 CARD.
J.Mol.Biol. 369 290 304 (2007)
PMID: 17408690 DOI: 10.1016/j.jmb.2007.02.105

Abstact

Caspase recruitment domains (CARDs) are members of the death domain superfamily and contain six antiparallel helices in an alpha-helical Greek key topology. We have examined the equilibrium and kinetic folding of the CARD of Apaf-1 (apoptotic protease activating factor 1), which consists of 97 amino acid residues, at pH 6 and pH 8. The results showed that an apparent two state equilibrium mechanism is not adequate to describe the folding of Apaf-1 CARD at either pH, suggesting the presence of intermediates in equilibrium unfolding. Interestingly, the results showed that the secondary structure is less stable than the tertiary structure, based on the transition mid-points for unfolding. Single mixing and sequential mixing stopped-flow studies showed that Apaf-1 CARD folds and unfolds rapidly and suggest a folding mechanism that contains parallel channels with two unfolded conformations folding to the native conformation. Kinetic simulations show that a slow folding phase is described by a third conformation in the unfolded ensemble that interconverts with one or both unfolded species. Overall, the native ensemble is formed rapidly upon refolding. This is in contrast to other CARDs in which folding appears to be dominated by formation of kinetic traps.

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