2OTK image
Deposition Date 2007-02-08
Release Date 2008-02-12
Last Version Date 2024-10-09
Entry Detail
PDB ID:
2OTK
Title:
Structure of Alzheimer Ab peptide in complex with an engineered binding protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
24
Selection Criteria:
structures with acceptable covalent geometry,structures with the least restraint violations,structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Amyloid beta A4 protein
Gene (Uniprot):APP
Chain IDs:A (auth: C)
Chain Length:40
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:ZAb3 Affibody dimer
Chain IDs:B (auth: E), C (auth: F)
Chain Length:71
Number of Molecules:2
Biological Source:engineered binding protein
Ligand Molecules
Primary Citation
Stabilization of a beta-hairpin in monomeric Alzheimer's amyloid-beta peptide inhibits amyloid formation.
Proc.Natl.Acad.Sci.Usa 105 5099 5104 (2008)
PMID: 18375754 DOI: 10.1073/pnas.0711731105

Abstact

According to the amyloid hypothesis, the pathogenesis of Alzheimer's disease is triggered by the oligomerization and aggregation of the amyloid-beta (Abeta) peptide into protein plaques. Formation of the potentially toxic oligomeric and fibrillar Abeta assemblies is accompanied by a conformational change toward a high content of beta-structure. Here, we report the solution structure of Abeta(1-40) in complex with the phage-display selected affibody protein Z(Abeta3), a binding protein of nanomolar affinity. Bound Abeta(1-40) features a beta-hairpin comprising residues 17-36, providing the first high-resolution structure of Abeta in beta conformation. The positions of the secondary structure elements strongly resemble those observed for fibrillar Abeta. Z(Abeta3) stabilizes the beta-sheet by extending it intermolecularly and by burying both of the mostly nonpolar faces of the Abeta hairpin within a large hydrophobic tunnel-like cavity. Consequently, Z(Abeta3) acts as a stoichiometric inhibitor of Abeta fibrillation. The selected Abeta conformation allows us to suggest a structural mechanism for amyloid formation based on soluble oligomeric hairpin intermediates.

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Disease

Primary Citation of related structures