2OKL image
Deposition Date 2007-01-17
Release Date 2008-01-15
Last Version Date 2023-12-27
Entry Detail
PDB ID:
2OKL
Keywords:
Title:
Crystal structure of Peptide Deformylase 2 with actinonin from Bacillus cereus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptide deformylase 2
Gene (Uniprot):def2
Chain IDs:A, B
Chain Length:185
Number of Molecules:2
Biological Source:Bacillus cereus
Primary Citation
Characterization of Peptide Deformylase2 from B. cereus
J.Biochem.Mol.Biol. 40 1050 1057 (2007)
PMID: 18047803

Abstact

Peptide deformylase (PDF) is a metalloenzyme that removes the N-terminal formyl groups from newly synthesized proteins. It is essential for bacterial survival, and is therefore-considered as a potential target for antimicrobial chemotherapy. However, some bacteria including medically relevant pathogens possess two or more def-like genes. Here we have examined two PDFs from Bacillus cereus. The two share only 32% sequence identity and the crystal structures show overall similarity with PDF2 having a longer C-terminus. However, there are differences at the two active sites, and these differences appear to contribute to the activity difference seen between the two. BcPDF2 is found as a dimer in the crystal form with two additional actinonin bound at that interface.

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Primary Citation of related structures