2OKI image
Deposition Date 2007-01-17
Release Date 2007-04-10
Last Version Date 2023-10-25
Entry Detail
PDB ID:
2OKI
Keywords:
Title:
Crystal structure of dimeric form of PfFabZ in crystal form2
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-hydroxyacyl-ACP dehydratase
Gene (Uniprot):fabZ
Chain IDs:A, B
Chain Length:136
Number of Molecules:2
Biological Source:Plasmodium falciparum
Primary Citation
Packing and loop-structure variations in non-isomorphous crystals of FabZ from Plasmodium falciparum
ACTA CRYSTALLOGR.,SECT.D 63 458 464 (2007)
PMID: 17372349 DOI: 10.1107/S0907444907003228

Abstact

The crystals obtained from various batches of crystallization trials of FabZ from Plasmodium falciparum exhibited non-isomorphism. The c axis of the I222 cell showed a large variation of about 16 A, from c = 81 A to c = 97 A. Complete data sets were collected for three crystal forms with varying lengths of the c axis (form 1, c = 97 A; form 2, c = 92 A; form 3, c = 81 A). The crystal structure of form 1 has been reported previously. Here, the crystal structures of the other two crystal forms are reported and a detailed structural comparison is made of the three crystal forms in order to explore the possible reasons for the existence of non-isomorphism. The conformations of three loops vary between the three crystal forms. The disposition of the loops affects the crystal packing and hence the unit-cell parameter. The crystallization condition and crystallization method employed, which change the evaporation rate, determine the crystal form of the enzyme. The present analysis shows that pH-induced intrinsic conformational changes in the protein play a key role in the observed differences.

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Primary Citation of related structures