2OIF image
Deposition Date 2007-01-10
Release Date 2007-07-24
Last Version Date 2023-12-27
Entry Detail
PDB ID:
2OIF
Title:
The crystal structure of ferric cyanide bound barley hexacoordinate hemoglobin.
Biological Source:
Source Organism:
Hordeum vulgare (Taxon ID: 4513)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Non-legume hemoglobin
Gene (Uniprot):HB
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:162
Number of Molecules:8
Biological Source:Hordeum vulgare
Primary Citation
Plant hemoglobins: a molecular fossil record for the evolution of oxygen transport
J.Mol.Biol. 371 168 179 (2007)
PMID: 17560601 DOI: 10.1016/j.jmb.2007.05.029

Abstact

The evolution of oxygen transport hemoglobins occurred on at least two independent occasions. The earliest event led to myoglobin and red blood cell hemoglobin in animals. In plants, oxygen transport "leghemoglobins" evolved much more recently. In both events, pentacoordinate heme sites capable of inert oxygen transfer evolved from hexacoordinate hemoglobins that have unrelated functions. High sequence homology between hexacoordinate and pentacoordinate hemoglobins in plants has poised them for potential structural analysis leading to a molecular understanding of this important evolutionary event. However, the lack of a plant hexacoordinate hemoglobin structure in the exogenously ligand-bound form has prevented such comparison. Here we report the crystal structure of the cyanide-bound hexacoordinate hemoglobin from barley. This presents the first opportunity to examine conformational changes in plant hexacoordinate hemoglobins upon exogenous ligand binding, and reveals structural mechanisms for stabilizing the high-energy pentacoordinate heme conformation critical to the evolution of reversible oxygen binding hemoglobins.

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