2O0O image
Deposition Date 2006-11-27
Release Date 2007-10-30
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2O0O
Title:
Crystal structure of TL1A
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TNF superfamily ligand TL1A
Chain IDs:A, B, C
Chain Length:180
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
X-ray crystal structure of TNF ligand family member TL1A at 2.1A.
Biochem.Biophys.Res.Commun. 364 1 6 (2007)
PMID: 17935696 DOI: 10.1016/j.bbrc.2007.09.097

Abstact

The TNF family has been one of the most intensively studied protein families in the past two decades and it has rapidly expanded through the era of genomics and bioinformatics. However, the structural basis of the functional and interactional similarities and differences of this family is poorly understood. TL1A is a recently identified TNF family member that has received increasing attention. Here, the crystal structure of human TL1A is reported. TL1A forms a homotrimer with each monomer assuming a jellyroll beta-sandwich fold. The CD loop in TL1A is the longest among the TNF ligand members with known structure and the AA' loop in TL1A is the second longest after that in TRAIL, where part of it is disordered. Both these loops are known to participate in receptor binding in TNFbeta/LTalpha. The AA' loop may be very different in other TL1A variants if the overall fold is to be preserved.

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