2O07 image
Deposition Date 2006-11-27
Release Date 2006-12-12
Last Version Date 2023-12-27
Entry Detail
PDB ID:
2O07
Keywords:
Title:
Human spermidine synthase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.89 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spermidine synthase
Gene (Uniprot):SRM
Chain IDs:A, B
Chain Length:304
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure and mechanism of spermidine synthases.
Biochemistry 46 8331 8339 (2007)
PMID: 17585781 DOI: 10.1021/bi602498k

Abstact

Aminopropyltransferases transfer aminopropyl groups from decarboxylated S-adenosylmethionine to amine acceptors, forming polyamines. Structural and biochemical studies have been carried out with the human spermidine synthase, which is highly specific for putrescine as the amine acceptor, and the Thermotoga maritima spermidine synthase, which prefers putrescine but is more tolerant of other substrates. Comparison of the structures of the human spermidine synthase with both substrates and products with the known structure of T. maritima spermidine synthase complexed to a multisubstrate analogue inhibitor and analysis of the properties of site-directed mutants provide a general mechanistic hypothesis for the aminopropyl transfer reaction. The studies also provide a structural basis for the specificity of the spermidine synthase subclass of the aminopropyltransferase family.

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Primary Citation of related structures