2NX9 image
Deposition Date 2006-11-17
Release Date 2006-12-26
Last Version Date 2023-08-30
Entry Detail
PDB ID:
2NX9
Keywords:
Title:
Crystal structure of the carboxyltransferase domain of the oxaloacetate decarboxylase Na+ pump from Vibrio cholerae
Biological Source:
Source Organism:
Vibrio cholerae (Taxon ID: 666)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oxaloacetate decarboxylase 2, subunit alpha
Gene (Uniprot):oadA-2
Chain IDs:A, B
Chain Length:464
Number of Molecules:2
Biological Source:Vibrio cholerae
Ligand Molecules
Primary Citation
Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na(+) Pump from Vibrio cholerae.
J.Mol.Biol. 367 547 557 (2007)
PMID: 17270211 DOI: 10.1016/j.jmb.2006.12.035

Abstact

Oxaloacetate decarboxylase is a membrane-bound multiprotein complex that couples oxaloacetate decarboxylation to sodium ion transport across the membrane. The initial reaction catalyzed by this enzyme machinery is the carboxyl transfer from oxaloacetate to the prosthetic biotin group. The crystal structure of the carboxyltransferase at 1.7 A resolution shows a dimer of alpha(8)beta(8) barrels with an active site metal ion, identified spectroscopically as Zn(2+), at the bottom of a deep cleft. The enzyme is completely inactivated by specific mutagenesis of Asp17, His207 and His209, which serve as ligands for the Zn(2+) metal ion, or by Lys178 near the active site, suggesting that Zn(2+) as well as Lys178 are essential for the catalysis. In the present structure this lysine residue is hydrogen-bonded to Cys148. A potential role of Lys178 as initial acceptor of the carboxyl group from oxaloacetate is discussed.

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Primary Citation of related structures
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