2NV7 image
Deposition Date 2006-11-10
Release Date 2007-08-21
Last Version Date 2024-04-03
Entry Detail
PDB ID:
2NV7
Keywords:
TRANSCRIPTION
Title:
Crystal Structure of Estrogen Receptor Beta Complexed with WAY-555
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.10 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
2NV7 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Estrogen receptor beta
Gene (Uniprot):ESR2
Chain IDs:A, B
Chain Length:238
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q92731 Pfam ID:PF00104
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor coactivator 1
Gene (Uniprot):NCOA1
Chain IDs:C, D
Chain Length:10
Number of Molecules:2
Biological Source:
UniProt ID:Q15788 EC:2.3.1.48
Ligand Molecules
555
Primary Citation
ERbeta ligands. Part 5: synthesis and structure-activity relationships of a series of 4'-hydroxyphenyl-aryl-carbaldehyde oxime derivatives.
Bioorg.Med.Chem.Lett. 17 902 906 (2007)
PMID: 17188490 DOI: 10.1016/j.bmcl.2006.11.066

Abstact

A series of 4'-hydroxyphenyl-aryl-carbaldehyde oximes (5b) was prepared and found to have high affinity (4nM) and modest selectivity (39-fold) for estrogen receptor-beta (ERbeta). Substitution of one of the core rings of the scaffold based around these novel ligands further expanded our knowledge in the quest toward achieving high affinity and selectivity for ERbeta. An X-ray co-crystal of structure 11 revealed that the oxime moiety was mimicking the C-ring of genistein, as previously predicted by SAR and docking studies.

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Primary Citation of related structures
2NV7