2NPQ image
Deposition Date 2006-10-29
Release Date 2007-10-16
Last Version Date 2023-10-25
Entry Detail
PDB ID:
2NPQ
Keywords:
Title:
A Novel Lipid Binding Site in the p38 alpha MAP Kinase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Mitogen-activated protein kinase 14
Gene (Uniprot):MAPK14
Chain IDs:A
Chain Length:367
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A novel lipid binding site formed by the MAP kinase insert in p38 alpha.
J.Mol.Biol. 375 70 79 (2008)
PMID: 17999933 DOI: 10.1016/j.jmb.2007.09.002

Abstact

The p38 mitogen-activated protein (MAP) kinases function as signaling molecules essential for many cellular processes, particularly mediating stress response. The activity of p38 MAP kinases is meticulously regulated to reach the desired cellular phenotype. Several alternative activation and attenuation mechanisms have been characterized recently which include new phosphorylation sites. Here we present the crystal structure of p38 alpha MAP kinase in complex with n-octyl-beta-glucopyranoside detergent. The complex unveils a novel lipid-binding site formed by a local conformational change of the MAP kinase insert. This binding is the first attribution for a possible role of the MAP kinase insert in p38. The binding site can accommodate a large selection of lipidic molecules. In addition, we also show via biophysical methods that arachidonic acid and its derivatives bind p38 alpha in vitro. Based on our analysis we propose that the binding of lipids could fine-tune p38 alpha catalytic activity towards a preferred phenotype.

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Primary Citation of related structures